Download 3.9.3.jar JAR files with dependency

gene-species-assignment from group de.julielab (version 1.0.0)

The task that is the subject of this project is the assignment of taxonomy identifiers to mentions of genes in text documents. The base for the assignment are mostly the mentions of species in the same document.

Group: de.julielab Artifact: gene-species-assignment
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Artifact gene-species-assignment
Group de.julielab
Version 1.0.0
Last update 03. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 8
Dependencies gene-mapper-experimental-base, gene-candidate-retrieval, jcore-types, junit-jupiter-engine, assertj-core, lucene-suggest, ruta-core, jcore-utilities,
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gene-mapper-experimental-base from group de.julielab (version 1.0.0)

This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.

Group: de.julielab Artifact: gene-mapper-experimental-base
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Artifact gene-mapper-experimental-base
Group de.julielab
Version 1.0.0
Last update 03. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 21
Dependencies commons-lang3, commons-text, julielab-java-utilities, slf4j-api, lucene-analyzers-common, guava, julielab-ranklib-mallet, jcore-mallet-2.0.9, libsvm, spark-core, guice, julie-xml-tools, julielab-entity-evaluator, ehcache, cache-api, annotations, commons-codec, commons-io, junit-jupiter-engine, assertj-core, com.wcohen.secondstring,
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enumeratum-argonaut_sjs1_2.11 from group com.beachape (version 1.7.1)

enumeratum-argonaut

Group: com.beachape Artifact: enumeratum-argonaut_sjs1_2.11
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Artifact enumeratum-argonaut_sjs1_2.11
Group com.beachape
Version 1.7.1
Last update 03. December 2022
Organization com.beachape
URL https://github.com/lloydmeta/enumeratum
License MIT
Dependencies amount 4
Dependencies scala-library, scalajs-library_2.11, argonaut_sjs1_2.11, enumeratum_sjs1_2.11,
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a8-sync-shared_sjs1_2.13 from group io.accur8 (version 1.0.0-20221203_1053_master)

a8-sync-shared

Group: io.accur8 Artifact: a8-sync-shared_sjs1_2.13
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Artifact a8-sync-shared_sjs1_2.13
Group io.accur8
Version 1.0.0-20221203_1053_master
Last update 03. December 2022
Organization io.accur8
URL https://github.com/accur8/sync
License APL2
Dependencies amount 19
Dependencies scala-library, scalajs-library_2.13, airframe-log_2.13, cats-core_2.13, case-insensitive_2.13, enumeratum_sjs1_2.13, sourcecode_sjs1_2.13, core_2.13, slf4j-jdk14, scalactic_2.13, jawn-parser_2.13, jawn-ast_2.13, async-http-client-backend-zio_2.13, zio-prelude_sjs1_2.13, zio_sjs1_2.13, zio-streams_sjs1_2.13, zio-logging_2.13, zio-logging-slf4j_2.13, scalajs-dom_sjs1_2.13,
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mathjax from group org.webjars.bowergithub.mathjax (version 3.2.2)

WebJar for MathJax

Group: org.webjars.bowergithub.mathjax Artifact: mathjax
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Artifact mathjax
Group org.webjars.bowergithub.mathjax
Version 3.2.2
Last update 03. December 2022
Organization not specified
URL https://www.webjars.org
License Apache-2.0
Dependencies amount 0
Dependencies No dependencies
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scalacheck-gen-regexp_3 from group io.github.wolfendale (version 1.1.0)

scalacheck-gen-regexp

Group: io.github.wolfendale Artifact: scalacheck-gen-regexp_3
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Artifact scalacheck-gen-regexp_3
Group io.github.wolfendale
Version 1.1.0
Last update 03. December 2022
Organization io.github.wolfendale
URL https://github.com/wolfendale/scalacheck-gen-regexp
License MIT
Dependencies amount 2
Dependencies scala3-library_3, scala-parser-combinators_3,
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scalacheck-gen-regexp_2.13 from group io.github.wolfendale (version 1.1.0)

scalacheck-gen-regexp

Group: io.github.wolfendale Artifact: scalacheck-gen-regexp_2.13
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Artifact scalacheck-gen-regexp_2.13
Group io.github.wolfendale
Version 1.1.0
Last update 03. December 2022
Organization io.github.wolfendale
URL https://github.com/wolfendale/scalacheck-gen-regexp
License MIT
Dependencies amount 2
Dependencies scala-library, scala-parser-combinators_2.13,
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scalacheck-gen-regexp_2.12 from group io.github.wolfendale (version 1.1.0)

scalacheck-gen-regexp

Group: io.github.wolfendale Artifact: scalacheck-gen-regexp_2.12
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Artifact scalacheck-gen-regexp_2.12
Group io.github.wolfendale
Version 1.1.0
Last update 03. December 2022
Organization io.github.wolfendale
URL https://github.com/wolfendale/scalacheck-gen-regexp
License MIT
Dependencies amount 2
Dependencies scala-library, scala-parser-combinators_2.12,
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code-style-rules from group pl.jalokim.coderules (version 1.0.9)

Group: pl.jalokim.coderules Artifact: code-style-rules
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Artifact code-style-rules
Group pl.jalokim.coderules
Version 1.0.9
Last update 03. December 2022
Organization not specified
URL Not specified
License Apache License, Version 2.0
Dependencies amount 7
Dependencies spring-web, spring-data-jpa, javax.persistence-api, querydsl-core, springfox-swagger2, archunit, archunit-junit4,
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haiti-utils-network from group dev.struchkov.haiti.utils (version 0.0.5)

Utilities for working with the web

Group: dev.struchkov.haiti.utils Artifact: haiti-utils-network
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Artifact haiti-utils-network
Group dev.struchkov.haiti.utils
Version 0.0.5
Last update 03. December 2022
Organization not specified
URL https://github.com/haiti-projects/haiti-utils-network
License not specified
Dependencies amount 4
Dependencies haiti-utils, okhttp, jackson-databind, logback-classic,
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